School of Engineering & Applied Sciences

John Miller

Associate Professor
  • Ph.D. in Chemical Physics, University of Virginia, 1971
  • B.S. in Physics & Mathematics, Davidson College, Davidson, NC, 1966

Joined WSU Tri-Cities in 2001 from the Pacific Northwest National Laboratory

Academic Interests

Teaching Interests

  • Theory of computation (Cpt S 317)
  • Design and analysis of algorithms (Cpt S 350)
  • Numerical analysis (Cpt S 430/530 Math 448/548)
  • Numerical methods in computational biology (Cpt S 572)
  • Artificial neural networks (Cpt S 434/534)
  • Data mining (new course Cpt S 483/580)
  • Artificial Intelligence (Cpt S 540)

Research Interests

  • bioinformatics and computational biology with an emphasis on their application to human health and bio fuels
Recent Publications
  • JH Miller, BT Schrom and LJ Kangas, “Artificial Neural Network for Charge Prediction in Metabolite Identification by Mass Spectrometry”, in: Artificial Neural Networks, 2nd Edition, Springer, (in press)
  • BL La Marche, JH Miller, RR Lewis, G Anderson, RD Smith, and S. Callister, “Quantitative LC-MS alignment using spectral clustering”, (in preparation)
  • Kangas, LJ, TO Metz, GL Mezengie, BT Schrom, BJ Genovska, RD Smith, L Tan RR Lewis and JH Miller, “ Metabolite In Silico Identification Software (Met ISIS): “A Machine Learning Approach to Tandem Mass Spectral Identification of Metabolites”, Bioinformatics, 28(13), 1705-1713, 2012
  • Miller, JH, WB Chrisler, X Wang and MB Sowa, “Confocal Microscopy for Modeling Electron Microbeam Irradiation of Skin”, Radiat. Environ. Biophys. 10.1007/s00411-011-0371
  • Miller, JH, A Suleiman, WB Chrisler and MB Sowa, “Simulation of Electron-Beam Irradiation of Skin Tissue Model”, Radiat. Res. 175(1), 113-118, 2011
  • Yang, F, KM Waters, JH Miller, MA Gristenko, R Zhao, X Du, E Livesay, SO Purvine, ME Monroe, Y Wang, DG Camp, RD Smith and DL Stenoien, “Phosphoproteomic profiling of human skin fibroblast cells reveals pathways and proteins affected by low doses of ionizing radiation”, PLoS ONE 5(11), e14152, 2010
  • Springer, DL, JH Miller, SL Spinelli, L Pasa-Tolic, SL Purvine, DS Daly, RC Zangar, S Jin, N Blumberg,  CW Francis, MB Taubman, AE Casey, SD Wittlin and RP Phipps, “Platelet proteome changes associated  with diabetes and during platelet storage for transfusion”, J. Proteome Res, 8, 2261-2272, 2009
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